Items where Author is "Amman, Fabian"

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Number of items: 18.

Journal Paper

  • Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment
    Farman, Mariam R. and Petráčková, Denisa and Kumar, Dilip and Držmíšek, Jakub and Saha, Argha and Čurnová, Ivana and Čapek, Jan and Hejnarová, Václava and Amman, Fabian and Hofacker, Ivo L. and Vecerek, Branislav Emerging Microbes & Infections, 12 (1). e2146536 ISSN 2222-1751 (2023)

  • Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq
    Rozner, Marlena and Nukarinen, Ella and Wolfinger, Michael T. and Amman, Fabian and Weckwerth, Wolfram and Bläsi, Udo and Sonnleitner, Elisabeth ISSN 0000-0000 Frontiers (2022)

  • Gene expression profiling of Pseudomonas aeruginosa upon exposure to colistin and tobramycin
    Cianciulli Sesso, Anastasia and Lilic, Branislav and Amman, Fabian and Wolfinger, Michael T. and Sonnleitner, Elisabeth and Bläsi, Udo p. 626715 ISSN 1664-302X FRONTIERS MEDIA SA (2021)

  • Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence — An Experimental Study of the Human Voltage-Dependent Anion Channel
    Zayni, Sonja and Damiati, Samar and Moreno-Flores, Susana and Amman, Fabian and Hofacker, Ivo L. and Jin, David and Ehmoser, Eva-Kathrin Membranes, 11. p. 741 ISSN 2077-0375 mdpi (2021)

  • Transcriptional profiling of human macrophages during infection with Bordetella pertussis
    Petráčková, Denisa and Farman, Mariam R. and Amman, Fabian and Linhartová, Irena and Dienstbier, Ana and Kumar, Dilip and Držmíšek, Jakub and Hofacker, Ivo L. and Rodriguez, Maria Eugenia and Vecerek, Branislav RNA Biology, 17 (5). pp. 731-742 ISSN 1555-8584 (2020)

  • MSF: Modulated Sub-graph Finder
    Farman, Mariam R. and Hofacker, Ivo L. and Amman, Fabian ISSN 2046-1402 (2019)

  • Comparative genomics of Czech vaccine strains of Bordetella pertussis
    Dienstbier, Ana and Pouchnik, Derek and Wildung, Mark and Amman, Fabian and Hofacker, Ivo L. and Parkhill, Julian and Holubova, Jana and Sebo, Peter and Vecerek, Branislav Pathogens and Disease, 76 (7). Oxford University Press (2018)

  • Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
    Hölzer, Martin and Krähling , Verena and Amman, Fabian and Barth, Emanuel and Bernhart, Stephan H. and Carmelo, Victor and Collatz, Maximilian and Doose, Gero and Eggenhofer, Florian and Ewald, Jan and Fallmann, Jörg and Feldhahn, Lasse and Fricke, Markus and Gebauer, Juliane and Gruber, Andreas R and Hufsky, Franziska and Indrischek, Henrike and Kanton, Sabina and Linde, Jörg and Mostajo, Nelly and Ochsenreiter, Roman and Riege, Konstantin and Rivarola-Duarte, Lorena and Sahyoun, Abdullah and Saunders, Sita and Seemann, Stefan E and Tanzer, Andrea and Vorgel, bertram and Wehner, Stefanie and Wolfinger, Michael T. and Backofen, Rolf and Gorodkin, Jan and Grosse, Ivo and Hoffmann, Steve and Hofacker, Ivo L. and Kaleta, Christoph and Stadler, Peter F. and Becker, Stephan and Marz, Manja ISSN 2045-2322 (2016)

  • Processed Small RNAs in Archaea and BHB Elements
    Berkemer, Sarah J. and Höner zu Siederdissen, Christian and Amman, Fabian and Wintsche, Axel and Will, Sebastian and Hofacker, Ivo L. and Prohaska, Sonja J. and Stadler, Peter F. Genomics Comp. Biol., 1. e18 ISSN 2365-7154 (2015)

  • Bioinformatics of prokaryotic RNAs
    Backofen, Rolf and Amman, Fabian and Costa, Fabrizio and Findeiß, Sven and Richter, Andreas S. and Stadler, Peter F. RNA Biol, 11 (5). pp. 470-483 ISSN 1547-6286 (2014)

  • Impact of Hfq on the Bacillus subtilis transcriptome
    Hämmerle, Hermann and Amman, Fabian and Vecerek, Branislav and Stülke, Jörg and Bläsi, Udo PLoS One, 9. e98661 ISSN 1932-6203 (2014)

  • TSSAR: TSS Annotation Regime for dRNA-seq data
    Amman, Fabian and Wolfinger, Michael T and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F and Findeiß, Sven BMC Bioinformatics, 15. p. 89 ISSN 1471-2105 (2014)

  • 2D meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction
    Lorenz, Ronny and Bernhart, Stephan H. and Qin, Jing and Höner zu Siederdissen, Christian and Tanzer, Andrea and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. IEEE Trans. Comp. Biol. Bioinf., 10. pp. 832-844 ISSN 1557-9964 (2013)

  • Alterations of the Transcriptome of Sulfolobus acidocaldarius by Exoribonuclease aCPSF2
    Märtens, Birgit and Amman, Fabian and Manoharadas, Salim and Zeichen, Lukas and Orell, Alvaro and Albers, Sonja-Verena and Hofacker, Ivo L. and Bläsi, Udo PloS one, 8 (10). e76569 ISSN 1932-6203 (2013)

  • Modelling Translation Initiation under the Influence of sRNA
    Amman, Fabian and Flamm, Christoph and Hofacker, Ivo L. International Journal of Molecular Sciences, 13 (12). pp. 16223-16240 ISSN 1422-0067 (2012)

  • Animal snoRNAs and scaRNAs with Exceptional Structures
    Marz, Manja and Gruber, Andreas R. and Höner zu Siederdissen, Christian and Amman, Fabian and Badelt, Stefan and Bartschat, Sebastian and Bernhart, Stephan H. and Beyer, Stephanie and Lorenz, Ronny and Tanzer, Andrea and Yusuf, Dilmurat and Tafer, Hakim and Hofacker, Ivo L. and Stadler, Peter F. RNA Biology, 8 (6). ISSN 1547-6286 Landes Bioscience (2011)

    • Paper in Conference Proceedings or in Workshop Proceedings

  • The Trouble with Long-Range Base Pairs in RNA Folding
    Amman, Fabian and Bernhart, Stephan H. and Doose, Gero and Hofacker, Ivo L. and Qin, Jing and Stadler, Peter F. and Will, Sebastian In: Brazilian Symposium on Bioinformatics 2013 , 3-6 Nov 2013 , Recife, Brazil (2013)

    • Book Section/Chapter

  • RNA Folding Algorithms with G-Quadruplexes
    Lorenz, Ronny and Bernhart, Stephan H. and Externbrink, Fabian and Qin, Jing and Höner zu Siederdissen, Christian and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. In: Advances in Bioinformatics and Computational Biology. Lecture Notes in Computer Science , 7409 Springer, pp. 49-60 (2012)

    • This list was generated on Fri Apr 19 21:51:50 2024 CEST.
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