Items where Author is "Findeiß, Sven"

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Number of items: 15.

Journal Paper

  • In silico design of ligand triggered RNA switches
    Findeiß, Sven and Hammer, Stefan and Wolfinger, Michael T. and Kühnl, Felix and Flamm, Christoph and Hofacker, Ivo L. Methods, 143. pp. 90-101 Elsevier (2018)

  • RNAblueprint: Flexible multiple target nucleic acid sequence design
    Hammer, Stefan and Tschiatschek, Birgit and Flamm, Christoph and Hofacker, Ivo L. and Findeiß, Sven Bioinformatics. ISSN 1367-4803 Oxford University Press (2017)

  • Design criteria for synthetic riboswitches acting on transcription
    Wachsmuth, Manja and Domin, Gesine and Lorenz, Ronny and Serfling, Robert and Findeiß, Sven and Stadler, Peter F. and Mörl, Mario RNA Biol, 12 (2). pp. 221-231 ISSN 1547-6286 (2015)

  • Bioinformatics of prokaryotic RNAs
    Backofen, Rolf and Amman, Fabian and Costa, Fabrizio and Findeiß, Sven and Richter, Andreas S. and Stadler, Peter F. RNA Biol, 11 (5). pp. 470-483 ISSN 1547-6286 (2014)

  • TSSAR: TSS Annotation Regime for dRNA-seq data
    Amman, Fabian and Wolfinger, Michael T and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F and Findeiß, Sven BMC Bioinformatics, 15. p. 89 ISSN 1471-2105 (2014)

  • Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
    Müller, Stephan A. and Findeiß, Sven and Pernitzsch, Sandy R. and Wissenbach, Dirk K. and Stadler, Peter F. and Hofacker, Ivo L. and von Bergen, Martin and Kalkhof, Stefan J Proteomics, 86. pp. 27-42 ISSN 1874-3919 (2013)

  • De novo design of a synthetic riboswitch that regulates transcription termination.
    Wachsmuth, Manja and Findeiß, Sven and Weissheimer, Nadine and Stadler, Peter F and Mörl, Mario Nucleic acids research, 41 (4). pp. 2541-51 ISSN 0305-1048 (2013)

  • Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.
    Doose, Gero and Alexis, Maria and Kirsch, Rebecca and Findeiß, Sven and Langenberger, David and Machné, Rainer and Mörl, Mario and Hoffmann, Steve and Stadler, Peter F. RNA biology, 10 (7). pp. 1204-10 ISSN 1547-6286 (2013)

  • De novo design of a synthetic riboswitch that regulates transcription termination.
    Wachsmuth, Manja and Findeiß, Sven and Weissheimer, Nadine and Stadler, Peter F. and Mörl, Mario Nucleic Acids Research, upcom (upcom). Oxford University Press (2012)

  • Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids.
    Findeiß, Sven and Engelhardt, Jan and Prohaska, Sonja J and Stadler, Peter F Biochemie, 93 (11). pp. 2019-2023 (2011)

  • Proteinortho: detection of (co-)orthologs in large-scale analysis.
    Lechner, Marcus and Findeiß, Sven and Steiner, Lydia and Marz, Manja and Stadler, Peter F and Prohaska, Sonja J BMC Bioinformatics, 12 (124). (2011)

  • RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.
    Washietl, Stefan and Findeiß, Sven and Müller, Stephan A and Kalkhof, Stefan and von Bergen, Martin and Hofacker, Ivo L. and Stadler, Peter F and Goldman, Nick RNA, 17 (4). pp. 578-594 (2011)

  • Traces of post-transcriptional RNA modifications in deep sequencing data
    Findeiß, Sven and Langenberger, David and Stadler, Peter F and Hoffmann, Steve The Journal of Biological Chemistry, 392 (4). pp. 305-313 American Society for Biochemistry and Molecular Biology (2011)

  • RNAcode: robust prediction of protein coding regions in comparative genomics data
    Washietl, Stefan and Findeiß, Sven and Müller, Stephan and Kalkhof, Stefan and Bergen, Martin von and Hofacker, Ivo L. and Stadler, Peter F. and Goldman, Nick RNA , 17 (4). pp. 578-594 Cold Spring Harbor Laboratory Press (2011)

    • Book Section/Chapter

  • Design of transcription regulating riboswitches
    Findeiß, Sven and Wachsmuth, Manja and Mörl, Mario and Stadler, Peter F. In: Riboswitches as Targets and Tools. Methods in Enzymology, pp. 1-22 (2015)

    • This list was generated on Thu Jan 9 17:11:05 2025 CET.
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