Items where Research Area is "Bioinformatics and Computational Biology" and Year is 2015

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Number of items: 18.

  • Thermodynamic and Kinetic Folding of Riboswitches
    Badelt, Stefan and Hammer, Stefan and Flamm, Christoph and Hofacker, Ivo L. In: Methods in Enzymology. Computational Methods for Understanding Riboswitches, 553 Academic Press, Waltham, Massachusetts, USA, pp. 193-213 (2015)

  • Building population-specific reference genomes: A case study of Vietnamese reference genome
    Bui, Minh Q. In: 7nd International Conference on Knowledge and Systems Engeneering (KSE 2015) , 8.-10.10.2015 , Ho Chi Minh City (2015)

  • Design of transcription regulating riboswitches
    Findeiß, Sven and Wachsmuth, Manja and Mörl, Mario and Stadler, Peter F. In: Riboswitches as Targets and Tools. Methods in Enzymology, pp. 1-22 (2015)

  • Optimizing RNA structures by sequence extensions using RNAcop
    Hecker, Nikolai and Christensen-Dalsgaard, Mikkel and Seemann, Stefan E and Havgaard, Jakob H and Stadler, Peter F and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan Nucleic acids research, 43 (17). pp. 8135-8145 ISSN 0305-1048 (2015)

  • Product grammars for alignment and folding.
    Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Stadler, Peter F. pp. 507-519 ISSN 1557-9964 (2015)

  • Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
    Kerpedjiev, Peter and Hammer, Stefan and Hofacker, Ivo L. Bioinformatics, 31 (20). pp. 3377-3379 ISSN 1367-4803 Oxford University Press (2015)

  • Predicting RNA 3D structure using a coarse-grain helix-centered model
    Kerpedjiev, Peter and Höner zu Siederdissen, Christian and Hofacker, Ivo L. RNA, 21. pp. 1110-1121 ISSN 1355-8382 (2015)

  • Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA
    Lavender, Christopher A. and Lorenz, Ronny and Zhang, Ge and Tamayo, Rita and Hofacker, Ivo L. and Weeks, Kevin M. PLoS Comput Biol, 11. e1004126 ISSN 1553-734X (2015)

  • SHAPE directed RNA folding
    Luntzer, Dominik and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. and Wolfinger, Michael T. Bioinformatics, 32. pp. 145-147 ISSN 1367-4803 (2015)

  • Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM
    Petkovic, Sonja and Badelt, Stefan and Block, Stephan and Flamm, Christoph and Delcea, Mihaela and Hofacker, Ivo L. and Müller, Sabine RNA, 21. pp. 1249-1260 ISSN 1355-8382 (2015)

  • Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.
    Smolka, Moritz and von Haeseler, Arndt and Sedlazeck, Fritz and Rescheneder, Philipp ISSN 1474-760X BioMed Central Ltd (2015)

  • RNA 3D modules in genome-wide predictions of RNA 2D structure
    Theis, Corinna and Zirbel, Craig and Höner zu Siederdissen, Christian and Anthon, Christian and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan PLoS ONE, 10 (10). ISSN 1932-6203 (2015)

  • Design criteria for synthetic riboswitches acting on transcription
    Wachsmuth, Manja and Domin, Gesine and Lorenz, Ronny and Serfling, Robert and Findeiß, Sven and Stadler, Peter F. and Mörl, Mario RNA Biol, 12 (2). pp. 221-231 ISSN 1547-6286 (2015)

  • Split diversity in constrained conservation prioritization using integer linear programming
    von Haeseler, Arndt and Bui, Minh Q. and Chernomor, Olga and Henzinger, Monika pp. 83-91 ISSN 2041-210X WILEY-BLACKWELL (2015)

  • Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference
    von Haeseler, Arndt and Chernomor, Olga and Bui, Minh Q. pp. 1129-1142 ISSN 1935-472X Mary Ann Liebert Inc. (2015)

  • Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study
    von Haeseler, Arndt and Krunic, Milica and Sedlazeck, Fritz ISSN 1746-6148 BioMed Central Ltd (2015)

  • Innate Immune Response to Streptococcus pyogenes Depends on the Combined Activation of TLR13 and TLR2
    von Haeseler, Arndt and Köstler, Tina and Kovarik, Pavel ISSN 1932-6203 PUBLIC LIBRARY OF SCIENCE (2015)

  • The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways.
    von Haeseler, Arndt and Sedlazeck, Fritz e1005218 ISSN 1553-7366 PUBLIC LIBRARY OF SCIENCE (2015)

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