Items where Research Area is "Bioinformatics and Computational Biology" and Year is 2016

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Number of items: 25.

  • Computational design of a circular RNA with prion-like behavior
    Badelt, Stefan and Flamm, Christoph and Hofacker, Ivo L. pp. 172-184 ISSN 1064-5462 (2016)

  • Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
    Bui, Minh Q. and Burki, Fabien and Kaplan, Maia and Tikhonenkov, Denis V. and Zlatogursky, Vasily and Radaykina, Liudmila V. and Smirnov, Alexey and Mylnikov, Alexander P. and Keeling, Patrick J. ISSN 0962-8452 Royal Society PROCEEDINGS B (2016)

  • Split Diversity: Measuring and Optimizing Biodiversity Using Phylogenetic Split Networks
    Chernomor, Olga and Klaere, Steffen and von Haeseler, Arndt and Bui, Minh Q. In: Biodiversity Conservation and Phylogenetic Systematics. Topics in Biodiversity and Conservation, 14 Springer International Publishing, Heidelberg/New York, pp. 173-195 ISBN 1875-1288 (2016)

  • Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
    Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang Systematic Biology, 65 (6). pp. 997-1008 ISSN 1063-5157 Oxford University Press, on behalf of the Society of Systematic Biologists (2016)

  • Applicability of a computational design approach for synthetic riboswitches
    Domin, Gesine and Findeiss, Sven and Wachsmuth, Manja and Will, Sebastian and Peter, Stadler and Mario, Moerl ISSN 0305-1048 Nucleic Acids Research (2016)

  • RNAlien - Unsupervised RNA family model construction
    Eggenhofer, Florian and Höner zu Siederdissen, Christian and Hofacker, Ivo L. pp. 8433-8441 ISSN 0305-1048 (2016)

  • AREsite2: An enhanced database for the comprehensive investigation of AU/GU/U-rich elements
    Fallmann, Jörg and Sedlyarov, Vitaly and Tanzer, Andrea and Kovarik, Pavel and Hofacker, Ivo L. D90-D95 ISSN 0305-1048 (2016)

  • Dosage Compensation and the Distribution of Sex-Biased Gene Expression in Drosophila: Considerations and Genomic Constraints
    Gallach, Miguel and Betrán, Esther Journal of Molecular Evolution, 82 (4-5). pp. 199-206 ISSN 0022-2844 Springer US (2016)

  • Next-generation sequencing diagnostics of bacteremia in septic patients
    Grumaz, Silke and Stevens, Philip and Grumaz, Christian and Decker, Sebastian O. and Weigand, Markus A. and Hofer, Stefan and Brenner, Thorsten and von Haeseler, Arndt and Sohn, Kai Genome Medicine, 8:73 (1). ISSN 1756-994X BioMed Central (Springer Nature) (2016)

  • Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks
    Hsiao, Yu-Ting and Lee, Wei-Po and Müller, Stefan and Flamm, Christoph and Hofacker, Ivo L. and Kügler, Philipp pp. 64-75 ISSN 1557-9964 (2016)

  • Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
    Hölzer, Martin and Krähling , Verena and Amman, Fabian and Barth, Emanuel and Bernhart, Stephan H. and Carmelo, Victor and Collatz, Maximilian and Doose, Gero and Eggenhofer, Florian and Ewald, Jan and Fallmann, Jörg and Feldhahn, Lasse and Fricke, Markus and Gebauer, Juliane and Gruber, Andreas R and Hufsky, Franziska and Indrischek, Henrike and Kanton, Sabina and Linde, Jörg and Mostajo, Nelly and Ochsenreiter, Roman and Riege, Konstantin and Rivarola-Duarte, Lorena and Sahyoun, Abdullah and Saunders, Sita and Seemann, Stefan E and Tanzer, Andrea and Vorgel, bertram and Wehner, Stefanie and Wolfinger, Michael T. and Backofen, Rolf and Gorodkin, Jan and Grosse, Ivo and Hoffmann, Steve and Hofacker, Ivo L. and Kaleta, Christoph and Stadler, Peter F. and Becker, Stephan and Marz, Manja ISSN 2045-2322 (2016)

  • The genomic basis of circadian and circalunar timing adaptations in a midge
    Kaiser, Tobias and Poehn, Birgit and Szkiba, David and Preussner, Marco and Sedlazeck, Fritz and Zrim, Alexander and Neumann, Tobias and Nguyen, Lam Tung and Betancourt, Andrea J. and Hummel, Thomas and Vogel, Heiko and Dorner, Silke and Heyd, Florian and von Haeseler, Arndt and Tessmar-Raible, Kristin pp. 69-73 ISSN 0028-0836 Macmillan Publishers Limited, part of Springer Nature (2016)

  • INO80 represses osmostress induced gene expression by resetting promoter proximal nucleosomes
    Klopf, Eva and Schmidt, Heiko A. and Clauder-Münster, Sandra and Steinmetz, Lars M. and Schüller, Christoph pp. 3752-3766 ISSN 0305-1048 Oxford University Press (2016)

  • Molecular Profiling of Thymoma and Thymic Carcinoma: Genetic Differences and Potential Novel Therapeutic Targets
    Krunic, Milica and Franz, Enkner and Bettina, Pichlhöfer and Alexandru Teodor, Zaharie and Tina Maria, Holper and Stefan, Janik and Bernhard, Moser and Karin, Schlangen and Barbara, Neudert and Karin, Walter and Brigitte, Migschitz and Leonard, Müllauer pp. 551-564 ISSN 1532-2807 Springer International Publishing AG. Part of Springer Nature (2016)

  • Pseudoknots in RNA folding landscapes
    Kucharik, Marcel and Hofacker, Ivo L. and Stadler, Peter F. and Qin, Jing Bioinformatics, 32. pp. 187-194 ISSN 1367-4803 (2016)

  • RNA folding with hard and soft constraints
    Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. ISSN 1748-7188 (2016)

  • Predicting RNA secondary structures from sequence and probing data
    Lorenz, Ronny and Wolfinger, Michael T. and Tanzer, Andrea and Hofacker, Ivo L. pp. 86-98 ISSN 1046-2023 (2016)

  • An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile
    Prakash, Celine and von Haeseler, Arndt Journal of Computational Biology, 23. ISSN 1066-5277 Mary Ann Liebert Inc. (2016)

  • Comparative Genomics Identifies Epidermal Proteins Associated with the Evolution of the Turtle Shell
    Schmidt, Heiko A. and Holthaus, Karin Birgit and Strasser, Bettina and Sipos, Wolfgang and Mlitz, Veronika and Sukseree, Supawadee and Weissenbacher, Anton and Tschalter, Erwin and Alibardi, Lorenzo and Eckhart, Leopold pp. 726-737 ISSN 0737-4038 Oxford Journals - Molecular Biology and Evolution (2016)

  • Reversible polymorphism-aware phylogenetic models and their application to tree inference
    Schrempf, Dominik and Minh, Bui Quang and De Maio, Nicola and von Haeseler, Arndt and Kosiol, Carolin Journal of Theoretical Biology, 407. pp. 362-370 ISSN 0022-5193 Elsevier (2016)

  • Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution
    Sedlyarov, Vitaly and Fallmann, Jörg and Ebner, Florian and Huemer, Jakob and Sneezum, Lucy and Ivin, Masa and Kreiner, Kristina and Tanzer, Andrea and Vogl, Claus and Hofacker, Ivo L. and Kovarik, Pavel ISSN 1744-4292 (2016)

  • Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity
    Tajaddod, Mansoureh and Tanzer, Andrea and Licht, Konstantin and Wolfinger, Michael T. and Badelt, Stefan and Huber, Florian and Pusch, Oliver and Schopoff, Sandy and Janisiw, Michael and Hofacker, Ivo L. and Jantsch, Michael F. p. 220 ISSN 1474-760X (2016)

  • W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
    Trifinopoulos, Jana and Nguyen, Lam-Tung and von Haeseler, Arndt and Minh, Bui Quang Nucleic Acids Research, 44 (W1). W232-W235 ISSN 0305-1048 Oxford University Press (2016)

  • Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance
    von Haeseler, Arndt and Gallach, Miguel and Paulin Paz, Luis and Jantsch, Verena and Villeneuve, Anne M. and Tam, Angela and Habacher, Cornelia and Tang, Louis and Dello Stritto, Maria Rosaria and Mikl, Martin and Millonigg, Sophie and Woglar, Alexander and Hamminger, Patricia and Jagut, Marlène ISSN 1544-9173 PLOS Biology (2016)

  • A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha
    von Haeseler, Arndt and Rescheneder, Philipp and Gesson, Kevin and Skoruppa, Michael P. and Dechat, Thomas and Foisner, Roland pp. 462-473 ISSN 1088-9051 CSH Press (Cold Spring Harbor Press) (2016)

    • This list was generated on Mon Apr 15 22:28:44 2024 CEST.
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