Items where Author is "Badelt, Stefan"

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Number of items: 8.

  • DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
    Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. Bioinformatics, 39 (1). btad034 ISSN 1367-4803 Oxford University Press (2023)

  • Caveats to deep learning approaches to RNA secondary structure prediction
    Flamm, Christoph and Wielach, Julia and Wolfinger, Michael T. and Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. ISSN 0000-0000 Frontiers (2022)

  • Computational design of a circular RNA with prion-like behavior
    Badelt, Stefan and Flamm, Christoph and Hofacker, Ivo L. pp. 172-184 ISSN 1064-5462 (2016)

  • Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity
    Tajaddod, Mansoureh and Tanzer, Andrea and Licht, Konstantin and Wolfinger, Michael T. and Badelt, Stefan and Huber, Florian and Pusch, Oliver and Schopoff, Sandy and Janisiw, Michael and Hofacker, Ivo L. and Jantsch, Michael F. p. 220 ISSN 1474-760X (2016)

  • Thermodynamic and Kinetic Folding of Riboswitches
    Badelt, Stefan and Hammer, Stefan and Flamm, Christoph and Hofacker, Ivo L. In: Methods in Enzymology. Computational Methods for Understanding Riboswitches, 553 Academic Press, Waltham, Massachusetts, USA, pp. 193-213 (2015)

  • Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM
    Petkovic, Sonja and Badelt, Stefan and Block, Stephan and Flamm, Christoph and Delcea, Mihaela and Hofacker, Ivo L. and Müller, Sabine RNA, 21. pp. 1249-1260 ISSN 1355-8382 (2015)

  • Computational design of a circular RNA with prion-like behavior
    Badelt, Stefan and Flamm, Christoph and Hofacker, Ivo L. In: Artificial Life 14 , 30.7.2014 - 2.8.2014 , New York, USA (2014)

  • Animal snoRNAs and scaRNAs with Exceptional Structures
    Marz, Manja and Gruber, Andreas R. and Höner zu Siederdissen, Christian and Amman, Fabian and Badelt, Stefan and Bartschat, Sebastian and Bernhart, Stephan H. and Beyer, Stephanie and Lorenz, Ronny and Tanzer, Andrea and Yusuf, Dilmurat and Tafer, Hakim and Hofacker, Ivo L. and Stadler, Peter F. RNA Biology, 8 (6). ISSN 1547-6286 Landes Bioscience (2011)

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