Items where Author is "Stadler, Peter F"

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Number of items: 8.

Journal Paper

  • Optimizing RNA structures by sequence extensions using RNAcop
    Hecker, Nikolai and Christensen-Dalsgaard, Mikkel and Seemann, Stefan E and Havgaard, Jakob H and Stadler, Peter F and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan Nucleic acids research, 43 (17). pp. 8135-8145 ISSN 0305-1048 (2015)

  • TSSAR: TSS Annotation Regime for dRNA-seq data
    Amman, Fabian and Wolfinger, Michael T and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F and Findeiß, Sven BMC Bioinformatics, 15. p. 89 ISSN 1471-2105 (2014)

  • De novo design of a synthetic riboswitch that regulates transcription termination.
    Wachsmuth, Manja and Findeiß, Sven and Weissheimer, Nadine and Stadler, Peter F and Mörl, Mario Nucleic acids research, 41 (4). pp. 2541-51 ISSN 0305-1048 (2013)

  • Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids.
    Findeiß, Sven and Engelhardt, Jan and Prohaska, Sonja J and Stadler, Peter F Biochemie, 93 (11). pp. 2019-2023 (2011)

  • Proteinortho: detection of (co-)orthologs in large-scale analysis.
    Lechner, Marcus and Findeiß, Sven and Steiner, Lydia and Marz, Manja and Stadler, Peter F and Prohaska, Sonja J BMC Bioinformatics, 12 (124). (2011)

  • RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.
    Washietl, Stefan and Findeiß, Sven and Müller, Stephan A and Kalkhof, Stefan and von Bergen, Martin and Hofacker, Ivo L. and Stadler, Peter F and Goldman, Nick RNA, 17 (4). pp. 578-594 (2011)

  • Traces of post-transcriptional RNA modifications in deep sequencing data
    Findeiß, Sven and Langenberger, David and Stadler, Peter F and Hoffmann, Steve The Journal of Biological Chemistry, 392 (4). pp. 305-313 American Society for Biochemistry and Molecular Biology (2011)

  • Genome-wide transcriptome analysis in the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.
    Schmidtke, Cornelius and Sven, Findeiß (co-first author) and Sharma, Cythia M and Kuhfuß, Juliane and Hoffmann, Steve and Vogel, Jörg and Stadler, Peter F and Bonas, Ulla Nucleic Acids Research. Oxford University Press (Submitted) (2011)

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