Items where Author is "Höner zu Siederdissen, Christian"

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Number of items: 18.

Journal Paper

  • CMV: visualization for RNA and protein family models and their comparisons
    Eggenhofer, Florian and Hofacker, Ivo L. and Backofen, Rolf and Höner zu Siederdissen, Christian Bioinformatics, 34 (15). pp. 2676-2678 ISSN 1367-4803 Oxford University Press (2018)

  • microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
    Gerresheim, Gesche and Dünnes, Nadia and Nieder-Röhrmann, Anika and Shalamova, Lyudmila and Fricke, Markus and Hofacker, Ivo L. and Höner zu Siederdissen, Christian and Marz, Manja and Niepmann, Michael pp. 747-760 ISSN 1420-682X (2017)

  • RNAlien - Unsupervised RNA family model construction
    Eggenhofer, Florian and Höner zu Siederdissen, Christian and Hofacker, Ivo L. pp. 8433-8441 ISSN 0305-1048 (2016)

  • Product grammars for alignment and folding.
    Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Stadler, Peter F. pp. 507-519 ISSN 1557-9964 (2015)

  • Predicting RNA 3D structure using a coarse-grain helix-centered model
    Kerpedjiev, Peter and Höner zu Siederdissen, Christian and Hofacker, Ivo L. RNA, 21. pp. 1110-1121 ISSN 1355-8382 (2015)

  • Processed Small RNAs in Archaea and BHB Elements
    Berkemer, Sarah J. and Höner zu Siederdissen, Christian and Amman, Fabian and Wintsche, Axel and Will, Sebastian and Hofacker, Ivo L. and Prohaska, Sonja J. and Stadler, Peter F. Genomics Comp. Biol., 1. e18 ISSN 2365-7154 (2015)

  • RNA 3D modules in genome-wide predictions of RNA 2D structure
    Theis, Corinna and Zirbel, Craig and Höner zu Siederdissen, Christian and Anthon, Christian and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan PLoS ONE, 10 (10). ISSN 1932-6203 (2015)

  • 2D meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction
    Lorenz, Ronny and Bernhart, Stephan H. and Qin, Jing and Höner zu Siederdissen, Christian and Tanzer, Andrea and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. IEEE Trans. Comp. Biol. Bioinf., 10. pp. 832-844 ISSN 1557-9964 (2013)

  • Automated identification of RNA 3D modules with discriminative power in RNA structural alignments
    Theis, Corinna and Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Gorodkin, Jan Nucleic acids research, 41. pp. 9999-10009 ISSN 0305-1048 (2013)

  • CMCompare webserver: Comparing RNA Families via Covariance models
    Eggenhofer, Florian and Hofacker, Ivo L. and Höner zu Siederdissen, Christian Nucleic Acids Res., 41. W499-W503 ISSN 0305-1048 (2013)

  • Computational Design of RNAs with Complex Energy Landscapes
    Höner zu Siederdissen, Christian and Hammer, Stefan and Abfalter, Ingrid and Hofacker, Ivo L. and Flamm, Christoph and Stadler, Peter F. Biopolymers, 99. pp. 1124-1136 ISSN 0006-3525 (2013)

  • ViennaRNA Package 2.0
    Lorenz, Ronny and Bernhart, Stephan H and Höner zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F. and Hofacker, Ivo L. Algorithms for Molecular Biology, 6 (1). p. 26 Biomed Central (2011)

  • Animal snoRNAs and scaRNAs with Exceptional Structures
    Marz, Manja and Gruber, Andreas R. and Höner zu Siederdissen, Christian and Amman, Fabian and Badelt, Stefan and Bartschat, Sebastian and Bernhart, Stephan H. and Beyer, Stephanie and Lorenz, Ronny and Tanzer, Andrea and Yusuf, Dilmurat and Tafer, Hakim and Hofacker, Ivo L. and Stadler, Peter F. RNA Biology, 8 (6). ISSN 1547-6286 Landes Bioscience (2011)

  • A Folding Algorithm for Extended RNA Secondary Structures
    Höner zu Siederdissen, Christian and Berhart, Stephan H. and Stadler, Peter F. and Hofacker, Ivo L. Bioinformatics, 27 ( ). i129-i136 Oxford University Press (2011)

  • Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    Hackl, Matthias and Jakobi, Tobias and Blom, Jochen and Doppmeier, Daniel and Brinkrolff, Karina and Sczepanowski, Rafael and Bernhart, Stephan and Höner zu Siederdissen, Christian and Hernandez-Bort, Juan and Wieser, Matthias and Kunert, Renate and Jeffs, Simon and Hofacker, Ivo L. and Goesmann, Alexander and Pühler, Alfred and Borth, Nicole and Grillari, Johannes Journal of Biotechnology, 153 (1-2). pp. 62-75 Elsevier (2011)

  • Discriminatory power of RNA family models.
    Höner zu Siederdissen, Christian and Hofacker, Ivo L Bioinformatics (Oxford, England), 26 (18). i453-9 ISSN 1367-4811 (2010)

    • Paper in Conference Proceedings or in Workshop Proceedings

  • How to Multiply Dynamic Programming Algorithms
    Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Stadler, Peter F. In: Brazilian Symposium on Bioinformatics 2013 , 3-6 Nov 2013 , Recife, Brazil (2013)

    • Book Section/Chapter

  • RNA Folding Algorithms with G-Quadruplexes
    Lorenz, Ronny and Bernhart, Stephan H. and Externbrink, Fabian and Qin, Jing and Höner zu Siederdissen, Christian and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. In: Advances in Bioinformatics and Computational Biology. Lecture Notes in Computer Science , 7409 Springer, pp. 49-60 (2012)

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