Items where Author is "Hofacker, Ivo L."

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Journal Paper

  • Beckmann, Irene K. and Waldl, Maria and Will, Sebastian and Hofacker, Ivo L. RNA. pp. 113-123 ISSN 1355-8382 (2024)
  • Mrozowich, Tyler and Park, Sean and Waldl, Maria and Henrickson, Amy and Tersteeg, Scott and Nelson, Corey and De Klerk, Anneke and Demeler, Borries and Hofacker, Ivo L. and Wolfinger, Michael T. and Patel, Trushar R. ISSN 0305-1048 (2023)
  • Farman, Mariam R. and Petráčková, Denisa and Kumar, Dilip and Držmíšek, Jakub and Saha, Argha and Čurnová, Ivana and Čapek, Jan and Hejnarová, Václava and Amman, Fabian and Hofacker, Ivo L. and Vecerek, Branislav Emerging Microbes & Infections, 12 (1). e2146536 ISSN 2222-1751 (2023)
  • Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. Bioinformatics, 39 (1). btad034 ISSN 1367-4803 Oxford University Press (2023)
  • Waldl, Maria and Spicher, Thomas and Lorenz, Ronny and Beckmann, Irene K. and Hofacker, Ivo L. and von Löhneysen, Sarah and Stadler, Peter F. p. 2350016 ISSN 1757-6334 World Scientific (2023)
  • Varenyk, Yuliia and Spicher, Thomas and Hofacker, Ivo L. and Lorenz, Ronny Bioinformatics, 39 (11). ISSN 1367-4803 Oxford University Press (2023)
  • Yao, Hua-Ting and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. Algorithms for Molecular Biology, 18 (1). p. 8 ISSN 1748-7188 Springer (2023)
  • Flamm, Christoph and Wielach, Julia and Wolfinger, Michael T. and Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. ISSN 0000-0000 Frontiers (2022)
  • Gosavi, Devadatta and Wower, Iwona and Beckmann, Irene K. and Hofacker, Ivo L. and Wolfinger, Michael T. and Sztuba-Solinska, Joanna pp. 496-506 ISSN 0305-1048 Taylor & Francis (2022)
  • Zayni, Sonja and Damiati, Samar and Moreno-Flores, Susana and Amman, Fabian and Hofacker, Ivo L. and Jin, David and Ehmoser, Eva-Kathrin Membranes, 11. p. 741 ISSN 2077-0375 mdpi (2021)
  • Entzian, Gregor and Hofacker, Ivo L. and Ponty, Yann and Lorenz, Ronny and Tanzer, Andrea Bioinformatics, 37. pp. 2126-2133 ISSN 1367-4803 (2021)
  • Petráčková, Denisa and Farman, Mariam R. and Amman, Fabian and Linhartová, Irena and Dienstbier, Ana and Kumar, Dilip and Držmíšek, Jakub and Hofacker, Ivo L. and Rodriguez, Maria Eugenia and Vecerek, Branislav RNA Biology, 17 (5). pp. 731-742 ISSN 1555-8584 (2020)
  • Kim, Doo Nam and Thiel, Bernhard and Mrozowich, Tyler and Henelly, Scatt P. and Hofacker, Ivo L. and Patel, Trushar R. and Sanbonmatsu, Karissa Y. ISSN 2041-1723 (2020)
  • Backofen, Rolf and Will, Sebastian and Hofacker, Ivo L. and Hutter, Frank and Miladi, Milad and Müller, Teresa Bioinformatics, 36. i242-i250 ISSN 1367-4803 (2020)
  • de Bernardi Schneider, Adriano and Ochsenreiter, Roman and Hostager, Reilly and Hofacker, Ivo L. and Janies, Daniel and Wolfinger, Michael T. p. 798 MDPI (2019)
  • Ochsenreiter, Roman and Hofacker, Ivo L. and Wolfinger, Michael T. Viruses, 11 (3). p. 298 ISSN 1999-4915 MDPI (2019)
  • Thiel, Bernhard and Beckmann, Irene K. and Kerpedjiev, Peter and Hofacker, Ivo L. ISSN 2046-1402 (2019)
  • Kiening, Michael and Ochsenreiter, Roman and Hellinger, Hans-Jörg and Rattei, Thomas and Hofacker, Ivo L. and Frishman, Dmitrij ISSN 1999-4915 MDPI (2019)
  • Deforges, Jules and Reis, Rodrigo and Jacquet, Philippe and Sheppard, Shaoline and Gadekar, Veerendra and Tanzer, Andrea and Hofacker, Ivo L. and Iseli, Christian and Xenarios, Ioannis and Poirier, Yves ISSN 0032-0889 (2019)
  • Gelhausen, Rick and Will, Sebastian and Hofacker, Ivo L. and Backofen, Rolf and Raden, Martin ISSN 1757-6334 (2019)
  • Farman, Mariam R. and Hofacker, Ivo L. and Amman, Fabian ISSN 2046-1402 (2019)
  • Eggenhofer, Florian and Hofacker, Ivo L. and Backofen, Rolf and Höner zu Siederdissen, Christian Bioinformatics, 34 (15). pp. 2676-2678 ISSN 1367-4803 Oxford University Press (2018)
  • Dienstbier, Ana and Pouchnik, Derek and Wildung, Mark and Amman, Fabian and Hofacker, Ivo L. and Parkhill, Julian and Holubova, Jana and Sebo, Peter and Vecerek, Branislav Pathogens and Disease, 76 (7). Oxford University Press (2018)
  • Wolfinger, Michael T. and Flamm, Christoph and Hofacker, Ivo L. Methods, 143. pp. 70-76 Elsevier (2018)
  • Findeiß, Sven and Hammer, Stefan and Wolfinger, Michael T. and Kühnl, Felix and Flamm, Christoph and Hofacker, Ivo L. Methods, 143. pp. 90-101 Elsevier (2018)
  • Thiel, Bernhard and Ochsenreiter, Roman and Gadekar, Veerendra and Tanzer, Andrea and Hofacker, Ivo L. Genes, 9 (8). p. 392 (2018)
  • Tanzer, Andrea and Hofacker, Ivo L. and Lorenz, Ronny Methods. Elsevier (2018)
  • Hammer, Stefan and Tschiatschek, Birgit and Flamm, Christoph and Hofacker, Ivo L. and Findeiß, Sven Bioinformatics. ISSN 1367-4803 Oxford University Press (2017)
  • Gerresheim, Gesche and Dünnes, Nadia and Nieder-Röhrmann, Anika and Shalamova, Lyudmila and Fricke, Markus and Hofacker, Ivo L. and Höner zu Siederdissen, Christian and Marz, Manja and Niepmann, Michael pp. 747-760 ISSN 1420-682X (2017)
  • Helmling, Christina and Wacker, Anna and Wolfinger, Michael T. and Hofacker, Ivo L. and Hengesbach, Martin and Fürtig, Boris and Schwalbe, Harald pp. 2647-2656 ISSN 0002-7863 (2017)
  • Alkan, Ferhat and Wenzel, Anne and Palasca, Oana and Kerpedjiev, Peter and Rudebeck, Anders Frost and Stadler, Peter F. and Hofacker, Ivo L. and Gorodkin, Jan e60 ISSN 0305-1048 (2017)
  • Thiel, Bernhard and Flamm, Christoph and Hofacker, Ivo L. pp. 275-285 ISSN 2397-8554 (2017)
  • Lorenz, Ronny and Wolfinger, Michael T. and Tanzer, Andrea and Hofacker, Ivo L. pp. 86-98 ISSN 1046-2023 (2016)
  • Sedlyarov, Vitaly and Fallmann, Jörg and Ebner, Florian and Huemer, Jakob and Sneezum, Lucy and Ivin, Masa and Kreiner, Kristina and Tanzer, Andrea and Vogl, Claus and Hofacker, Ivo L. and Kovarik, Pavel ISSN 1744-4292 (2016)
  • Fallmann, Jörg and Sedlyarov, Vitaly and Tanzer, Andrea and Kovarik, Pavel and Hofacker, Ivo L. D90-D95 ISSN 0305-1048 (2016)
  • Badelt, Stefan and Flamm, Christoph and Hofacker, Ivo L. pp. 172-184 ISSN 1064-5462 (2016)
  • Hölzer, Martin and Krähling , Verena and Amman, Fabian and Barth, Emanuel and Bernhart, Stephan H. and Carmelo, Victor and Collatz, Maximilian and Doose, Gero and Eggenhofer, Florian and Ewald, Jan and Fallmann, Jörg and Feldhahn, Lasse and Fricke, Markus and Gebauer, Juliane and Gruber, Andreas R and Hufsky, Franziska and Indrischek, Henrike and Kanton, Sabina and Linde, Jörg and Mostajo, Nelly and Ochsenreiter, Roman and Riege, Konstantin and Rivarola-Duarte, Lorena and Sahyoun, Abdullah and Saunders, Sita and Seemann, Stefan E and Tanzer, Andrea and Vorgel, bertram and Wehner, Stefanie and Wolfinger, Michael T. and Backofen, Rolf and Gorodkin, Jan and Grosse, Ivo and Hoffmann, Steve and Hofacker, Ivo L. and Kaleta, Christoph and Stadler, Peter F. and Becker, Stephan and Marz, Manja ISSN 2045-2322 (2016)
  • Hsiao, Yu-Ting and Lee, Wei-Po and Müller, Stefan and Flamm, Christoph and Hofacker, Ivo L. and Kügler, Philipp pp. 64-75 ISSN 1557-9964 (2016)
  • Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. ISSN 1748-7188 (2016)
  • Eggenhofer, Florian and Höner zu Siederdissen, Christian and Hofacker, Ivo L. pp. 8433-8441 ISSN 0305-1048 (2016)
  • Tajaddod, Mansoureh and Tanzer, Andrea and Licht, Konstantin and Wolfinger, Michael T. and Badelt, Stefan and Huber, Florian and Pusch, Oliver and Schopoff, Sandy and Janisiw, Michael and Hofacker, Ivo L. and Jantsch, Michael F. p. 220 ISSN 1474-760X (2016)
  • Kucharik, Marcel and Hofacker, Ivo L. and Stadler, Peter F. and Qin, Jing Bioinformatics, 32. pp. 187-194 ISSN 1367-4803 (2016)
  • Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Stadler, Peter F. pp. 507-519 ISSN 1557-9964 (2015)
  • Kerpedjiev, Peter and Hammer, Stefan and Hofacker, Ivo L. Bioinformatics, 31 (20). pp. 3377-3379 ISSN 1367-4803 Oxford University Press (2015)
  • Lavender, Christopher A. and Lorenz, Ronny and Zhang, Ge and Tamayo, Rita and Hofacker, Ivo L. and Weeks, Kevin M. PLoS Comput Biol, 11. e1004126 ISSN 1553-734X (2015)
  • Hecker, Nikolai and Christensen-Dalsgaard, Mikkel and Seemann, Stefan E and Havgaard, Jakob H and Stadler, Peter F and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan Nucleic acids research, 43 (17). pp. 8135-8145 ISSN 0305-1048 (2015)
  • Kerpedjiev, Peter and Höner zu Siederdissen, Christian and Hofacker, Ivo L. RNA, 21. pp. 1110-1121 ISSN 1355-8382 (2015)
  • Berkemer, Sarah J. and Höner zu Siederdissen, Christian and Amman, Fabian and Wintsche, Axel and Will, Sebastian and Hofacker, Ivo L. and Prohaska, Sonja J. and Stadler, Peter F. Genomics Comp. Biol., 1. e18 ISSN 2365-7154 (2015)
  • Theis, Corinna and Zirbel, Craig and Höner zu Siederdissen, Christian and Anthon, Christian and Hofacker, Ivo L. and Nielsen, Henrik and Gorodkin, Jan PLoS ONE, 10 (10). ISSN 1932-6203 (2015)
  • Luntzer, Dominik and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. and Wolfinger, Michael T. Bioinformatics, 32. pp. 145-147 ISSN 1367-4803 (2015)
  • Petkovic, Sonja and Badelt, Stefan and Block, Stephan and Flamm, Christoph and Delcea, Mihaela and Hofacker, Ivo L. and Müller, Sabine RNA, 21. pp. 1249-1260 ISSN 1355-8382 (2015)
  • Kucharik, Marcel and Hofacker, Ivo L. and Stadler, Peter F. and Qin, Jing Bioinformatics, 30. pp. 2009-2017 ISSN 1367-4803 (2014)
  • Marz, Manja and Beerenwinkel, Niko and Drosten, Christian and Fricke, Markus and Frishman, Dmitrij and Hofacker, Ivo L. and Hoffmann, Dieter and Middendorf, Martin and Rattei, Thomas and Stadler, Peter F. and Töpfer, Armin Bioinformatics, 30. pp. 1793-1799 ISSN 1367-4803 (2014)
  • Amman, Fabian and Wolfinger, Michael T and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F and Findeiß, Sven BMC Bioinformatics, 15. p. 89 ISSN 1471-2105 (2014)
  • Müller, Stephan A. and Findeiß, Sven and Pernitzsch, Sandy R. and Wissenbach, Dirk K. and Stadler, Peter F. and Hofacker, Ivo L. and von Bergen, Martin and Kalkhof, Stefan J Proteomics, 86. pp. 27-42 ISSN 1874-3919 (2013)
  • Lorenz, Ronny and Bernhart, Stephan H. and Qin, Jing and Höner zu Siederdissen, Christian and Tanzer, Andrea and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. IEEE Trans. Comp. Biol. Bioinf., 10. pp. 832-844 ISSN 1557-9964 (2013)
  • Märtens, Birgit and Amman, Fabian and Manoharadas, Salim and Zeichen, Lukas and Orell, Alvaro and Albers, Sonja-Verena and Hofacker, Ivo L. and Bläsi, Udo PloS one, 8 (10). e76569 ISSN 1932-6203 (2013)
  • Theis, Corinna and Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Gorodkin, Jan Nucleic acids research, 41. pp. 9999-10009 ISSN 0305-1048 (2013)
  • Eggenhofer, Florian and Hofacker, Ivo L. and Höner zu Siederdissen, Christian Nucleic Acids Res., 41. W499-W503 ISSN 0305-1048 (2013)
  • Höner zu Siederdissen, Christian and Hammer, Stefan and Abfalter, Ingrid and Hofacker, Ivo L. and Flamm, Christoph and Stadler, Peter F. Biopolymers, 99. pp. 1124-1136 ISSN 0006-3525 (2013)
  • Sabarinathan, Radhakrishnan and Tafer, Hakim and Seemann, Stefan and Hofacker, Ivo L. and Stadler, Peter F. and Gorodkin, Jan Nucleic Acids Res., 41. W475-W479 ISSN 0305-1048 (2013)
  • Sabarinathan, Radhakrishnan and Tafer, Hakim and Seemann, Stefan E. and Hofacker, Ivo L. and Stadler, Peter F. and Gorodkin, Jan Human Mutation, 34. 546-556 ISSN 1059-7794 (2013)
  • Lorenz, Ronny and Hofacker, Ivo L. and Bernhart, Stephan H Bioinformatics, 28 (19). pp. 2530-2531 ISSN 1367-4803 (2012)
  • Will, Sebastian and Joshi, Tejal and Hofacker, Ivo L. and Stadler, Peter F. and Backofen, Rolf RNA, 18 (5). pp. 900-914 ISSN 1355-8382 (2012)
  • Amman, Fabian and Flamm, Christoph and Hofacker, Ivo L. International Journal of Molecular Sciences, 13 (12). pp. 16223-16240 ISSN 1422-0067 (2012)
  • Washietl, Stefan and Hofacker, Ivo L. and Stadler, Peter F. and Kellis, Manolis Nucleic Acids Research, 40 (10). pp. 4261-4272 ISSN 0305-1048 (2012)
  • Hofacker, Ivo L. and Reidys, Christian M. and Stadler, Peter F. Discrete Mathematics, 312 (1). 100-112 Elsevier (2012)
  • Kratochvill, Franz and Machacek, Christian and Vogl, Claus and Ebner, Florian and Sedlyarov, Vitaly and Gruber, Andreas R and Hartweger, Hartweger and Vielnascher, Raimund and Karaghiosoff, Marina and Rülicke, Thomas and Müller, Mathias and Hofacker, Ivo L. and Lang, Roland and Kovarik, Pavel Molecular Systems Biology, 7 (560). Nature publishing group (2011)
  • Lorenz, Ronny and Bernhart, Stephan H and Höner zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F. and Hofacker, Ivo L. Algorithms for Molecular Biology, 6 (1). p. 26 Biomed Central (2011)
  • Washietl, Stefan and Findeiß, Sven and Müller, Stephan A and Kalkhof, Stefan and von Bergen, Martin and Hofacker, Ivo L. and Stadler, Peter F and Goldman, Nick RNA, 17 (4). pp. 578-594 (2011)
  • Gruber, Andreas R and Fallmann, Jörg and Kratochvill, Franz and Kovarik, Pavel and Hofacker, Ivo L. Nucleic Acids Research, 39. D66-D69 Oxford University Press (2011)
  • Marz, Manja and Gruber, Andreas R. and Höner zu Siederdissen, Christian and Amman, Fabian and Badelt, Stefan and Bartschat, Sebastian and Bernhart, Stephan H. and Beyer, Stephanie and Lorenz, Ronny and Tanzer, Andrea and Yusuf, Dilmurat and Tafer, Hakim and Hofacker, Ivo L. and Stadler, Peter F. RNA Biology, 8 (6). ISSN 1547-6286 Landes Bioscience (2011)
  • Tafer, Hakim and Ammann, Fabian and Eggenhoffer, Florian and Stadler, Peter F. and Hofacker, Ivo L. Bioinformatics, 27 (14). pp. 1924-1940 Oxford University Press (2011)
  • Höner zu Siederdissen, Christian and Berhart, Stephan H. and Stadler, Peter F. and Hofacker, Ivo L. Bioinformatics, 27 ( ). i129-i136 Oxford University Press (2011)
  • Hackl, Matthias and Jakobi, Tobias and Blom, Jochen and Doppmeier, Daniel and Brinkrolff, Karina and Sczepanowski, Rafael and Bernhart, Stephan and Höner zu Siederdissen, Christian and Hernandez-Bort, Juan and Wieser, Matthias and Kunert, Renate and Jeffs, Simon and Hofacker, Ivo L. and Goesmann, Alexander and Pühler, Alfred and Borth, Nicole and Grillari, Johannes Journal of Biotechnology, 153 (1-2). pp. 62-75 Elsevier (2011)
  • Washietl, Stefan and Findeiß, Sven and Müller, Stephan and Kalkhof, Stefan and Bergen, Martin von and Hofacker, Ivo L. and Stadler, Peter F. and Goldman, Nick RNA , 17 (4). pp. 578-594 Cold Spring Harbor Laboratory Press (2011)
  • Eggenhofer, Florian and Tafer, Hakim and Stadler, Peter F. and Hofacker, Ivo L. Nucleic Acids Research, 39 (S2). W149-W154 Oxford University Press (2011)
  • Tafer, Hakim and Ameres, Stefan L. and Obernosterer, Gregor and Gebeshuber, Christoph A. and Schroeder, Renée and Martinez, Javier and Hofacker, Ivo L. Nature Biotech., 26 (-). pp. 578-583 ISSN 1087-0156 Nature publishing (2008)
  • Paper in Conference Proceedings or in Workshop Proceedings

  • von Löhneysen, Sarah and Spicher, Thomas and Varenyk, Yuliia and Yao, Hua-Ting and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. In: International Symposium on Bioinformatics Research and Applications , October 9–12 , Wrocław, Poland (2023)
  • Stadler, Peter F. and Hofacker, Ivo L. and Flamm, Christoph and Lorenz, Ronny In: 13th International Joint Conference on Biomedical Engineering Systems and Technologies , 02.2020 , Valletta, Malta (2020)
  • Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. In: CIBB 2019: 16th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics , 4-6 September 2019 , Bergamo. Italy (2019)
  • Badelt, Stefan and Flamm, Christoph and Hofacker, Ivo L. In: Artificial Life 14 , 30.7.2014 - 2.8.2014 , New York, USA (2014)
  • Höner zu Siederdissen, Christian and Hofacker, Ivo L. and Stadler, Peter F. In: Brazilian Symposium on Bioinformatics 2013 , 3-6 Nov 2013 , Recife, Brazil (2013)
  • Amman, Fabian and Bernhart, Stephan H. and Doose, Gero and Hofacker, Ivo L. and Qin, Jing and Stadler, Peter F. and Will, Sebastian In: Brazilian Symposium on Bioinformatics 2013 , 3-6 Nov 2013 , Recife, Brazil (2013)
  • Book

  • Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. Lecture Notes in Computer Science, 12313 Springer, Cham, pp. 159-170 ISBN 978-3-030-63061-4 (2020)
  • Book Section/Chapter

  • Wolfinger, Michael T. and Ochsenreiter, Roman and Hofacker, Ivo L. In: Virus Bioinformatics. Chapman and Hall/CRC Press, Boca Raton, pp. 65-100 ISBN 9781003097679 (2021)
  • Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. In: Computational Intelligence Methods for Bioinformatics and Biostatistics. Lecture Notes in Computer Science, 12313 Springer, pp. 159-170 (2020)
  • Backofen, Rolf and Gorodkin, Jan and Hofacker, Ivo L. and Stadler, Peter F. In: Comparative Genomics. Methods in Molecular Biology, 1704 Humana Press, pp. 363-400 ISBN 978-1-4939-7461-0 (2018)
  • Badelt, Stefan and Hammer, Stefan and Flamm, Christoph and Hofacker, Ivo L. In: Methods in Enzymology. Computational Methods for Understanding Riboswitches, 553 Academic Press, Waltham, Massachusetts, USA, pp. 193-213 (2015)
  • Gorodkin, Jan and Ruzzo, Larry and Hofacker, Ivo L. In: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Meth. Mol. Biol., 1097 Humana Press, New York, pp. 1-31 (2014)
  • Hofacker, Ivo L. In: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Meth. Mol. Biol., 1097 Humana Press, New York, pp. 71-84 (2014)
  • Hofacker, Ivo L. and Lorenz, Ronny In: RNA Folding. Meth. Mol. Biol., 1086 Humana Press, pp. 1-19 (2014)
  • Lorenz, Ronny and Bernhart, Stephan H. and Externbrink, Fabian and Qin, Jing and Höner zu Siederdissen, Christian and Amman, Fabian and Hofacker, Ivo L. and Stadler, Peter F. In: Advances in Bioinformatics and Computational Biology. Lecture Notes in Computer Science , 7409 Springer, pp. 49-60 (2012)
  • This list was generated on Thu Oct 10 16:08:41 2024 CEST.