Items where Research Area is "Bioinformatics and Computational Biology" and Year is 2017

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Number of items: 15.

A

  • RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets
    Alkan, Ferhat and Wenzel, Anne and Palasca, Oana and Kerpedjiev, Peter and Rudebeck, Anders Frost and Stadler, Peter F. and Hofacker, Ivo L. and Gorodkin, Jan e60 ISSN 0305-1048 (2017)

    • G

  • microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
    Gerresheim, Gesche and Dünnes, Nadia and Nieder-Röhrmann, Anika and Shalamova, Lyudmila and Fricke, Markus and Hofacker, Ivo L. and Höner zu Siederdissen, Christian and Marz, Manja and Niepmann, Michael pp. 747-760 ISSN 1420-682X (2017)

    • H

  • RNAblueprint: Flexible multiple target nucleic acid sequence design
    Hammer, Stefan and Tschiatschek, Birgit and Flamm, Christoph and Hofacker, Ivo L. and Findeiß, Sven Bioinformatics. ISSN 1367-4803 Oxford University Press (2017)

  • NMR structural profiling of transcriptional intermediates reveals riboswitch regulation by metastable RNA conformations
    Helmling, Christina and Wacker, Anna and Wolfinger, Michael T. and Hofacker, Ivo L. and Hengesbach, Martin and Fürtig, Boris and Schwalbe, Harald pp. 2647-2656 ISSN 0002-7863 (2017)

  • Thiol-linked alkylation of RNA to assess expression dynamics
    Herzog, Veronika A. and Reichholf, Brian and Neumann, Tobias and Rescheneder, Philipp and Bhat, Pooja and Burkard, Thomas R. and Wlotzka, Wiebke and von Haeseler, Arndt and Zuber, Johannes and Ameres, Stefan L. ISSN 1548-7091 Macmillan Publishers Limited, part of Springer Nature (2017)

  • UFBoot2: Improving the Ultrafast Bootstrap Approximation
    Hoang, Diep Thi and Chernomor, Olga and von Haeseler, Arndt and Minh, Bui Quang and Vinh, Le Sy ISSN 0737-4038 Oxford University Press (2017)

    • K

  • ModelFinder: fast model selection for accurate phylogenetic estimates
    Kalyaanamoorthy, Subha and Bui, Minh Q. and Wong, Thomas K F and von Haeseler, Arndt and Jermiin, Lars S. pp. 587-589 ISSN 1548-7091 Macmillan Publishers Limited, part of Springer Nature (2017)

    • M

  • Antifungal defense of probiotic Lactobacillus rhamnosus GG is mediated by blocking adhesion and nutrient depletion
    Mailänder-Sánchez, Daniela and Braunsdorf, Christina and Grumaz, Christian and Müller, Christoph and Lorenz, Stefan and Stevens, Philip and Wagener, Jeanette and Hebecker, Betty and Hube, Bernhard and Bracher, Franz and Sohn, Kai and Schaller, Martin ISSN 1932-6203 PLOS (2017)

    • P

  • Temperature-dependent sRNA transcriptome of the Lyme disease spirochete
    Popitsch, Niko and Bilusic, Ivana and Rescheneder, Philipp and Schroeder, Renée and Lybecker, Meghan ISSN 1471-2164 BioMed Central (2017)

  • An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile
    Prakash, Celine and von Haeseler, Arndt pp. 200-2012 ISSN 1066-5277 Mary Ann Liebert, Inc. (2017)

    • R

  • HIV-1 Full-Genome Phylogenetics of Generalized Epidemics in Sub-Saharan Africa: Impact of Missing Nucleotide Characters in Next-Generation Sequences
    Ratmann, Oliver and Wymant, Chris and Colijn, Caroline and Danaviah, Siva and Essex, Max and Frost, Simon and Gall, Astrid and Gaiseitsiwe, Simani and Grabowski, Mary K. and Gray, Ronald and Guindon, Stephane and von Haeseler, Arndt and Kaleebu, Pontiano and Kendall, Michelle and Kozlov, Alexey and Manasa, Justen and Minh, Bui Quang and Moyo, Sikhulile and Novitsky, Vlad and Nsubuga, Rebecca and Pillay, Sureshnee and Quinn, Thomas C. and Seemwanga, Deogratius and Stamatakis, Alexandros and Trifinopoulos, Jana and Wawer, Maria and Brown, Andy Leigh and de Oliveira, Tulio and Kellam, Paul and Pillay, Deenan and Fraser, Christophe and Serwadda, David pp. 1083-1098 ISSN 0889-2229 Mary Ann Liebert, Inc. publishers (2017)

    • S

  • Natural RNA Polymerase Aptamers Regulate Transcription in E. coli.
    Sedlyarova, Nadezda and Rescheneder, Philipp and Magan, Andres and Popitsch, Niko and Rziha, Natascha and Bilusic, Ivana and Epshtein, Vitaly and Zimmermann, Bob and Lybecker, Meghan and Sedlyarov, Vitaly and Schroeder, Renée and Nudler, Evgeny pp. 30-43 ISSN 1097-2765 Elsevier Inc. (2017)

    • T

  • RNA structure prediction: from 2D to 3D
    Thiel, Bernhard and Flamm, Christoph and Hofacker, Ivo L. pp. 275-285 ISSN 2397-8554 (2017)

    • V

  • Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model
    von Haeseler, Arndt and Minh, Bui Quang and Lam-Tung, Nguyen ISSN 1063-5157 Oxford University Press (2017)

    • W

  • Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation
    Wang, Huai-Chun and Minh, Bui Quang and Susko, Edward and Roger, Andrew J. ISSN 1063-5157 Oxford University Press (2017)

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