Items where Author is "Wolfinger, Michael T."

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Number of items: 32.

Journal Paper

  • The 3’ terminal region of Zika virus RNA contains a conserved G-quadruplex and is unfolded by human DDX17
    Gemmill, Darren and Nelson, Corey and Badmalia, Maulik D. and Pereira, Higor and Kerr, Liam and Wolfinger, Michael T. and Patel, Trushar R. ISSN 0829-8211 (2024)

  • A Structural Refinement Technique for Protein-RNA Complexes Using a Combination of AI-based Modeling and Flexible Docking: A Study of Musashi-1 Protein
    Darai, Nitchakan and Hengphasatporn, Kowit and Wolschann, Peter and Wolfinger, Michael T. and Shigeta, Yasuteru and Rungrotmongkol, Thanyada and Harada, Ryuhei ISSN 0009-2673 (2024)

  • Investigating RNA- RNA interactions through computational and biophysical analysis.
    Mrozowich, Tyler and Park, Sean and Waldl, Maria and Henrickson, Amy and Tersteeg, Scott and Nelson, Corey and De Klerk, Anneke and Demeler, Borries and Hofacker, Ivo L. and Wolfinger, Michael T. and Patel, Trushar R. ISSN 1362-4962 (2023)

  • Strukturierte RNAs in Viren
    Ochsenreiter, Roman and Wolfinger, Michael T. ISSN 1868-6249 (2023)

  • Theoretical studies on RNA recognition by Musashi 1 RNA-binding protein
    Darai, Nitchakan and Mahalapbutr, Panupong and Wolschann, Peter and Lee, Vannajan Sanghiran and Wolfinger, Michael T. and Rungrotmongkol, Thanyada ISSN 2045-2322 Nature Publishing Group (2022)

  • Caveats to deep learning approaches to RNA secondary structure prediction
    Flamm, Christoph and Wielach, Julia and Wolfinger, Michael T. and Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. ISSN 0000-0000 Frontiers (2022)

  • Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq
    Rozner, Marlena and Nukarinen, Ella and Wolfinger, Michael T. and Amman, Fabian and Weckwerth, Wolfram and Bläsi, Udo and Sonnleitner, Elisabeth ISSN 0000-0000 Frontiers (2022)

  • Evolutionary traits of Tick-borne encephalitis virus: Pervasive non-coding RNA structure conservation and molecular epidemiology
    Kutschera, Lena S and Wolfinger, Michael T. veac051 ISSN 0000-0000 Oxford University Press (2022)

  • Biophysical Characterisation of Human LincRNA-p21 Sense and Antisense Alu Inverted Repeats
    D’Souza, Michael H and Mrozowich, Tyler and Badmalia, Maulik D. and Geeraert, Mitchell and Frederickson, Angela and Henrickson, Amy and Demeler, Borries and Wolfinger, Michael T. and Patel, Trushar R. pp. 5881-5898 ISSN 0305-1048 Oxford University Press (2022)

  • Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site
    Gosavi, Devadatta and Wower, Iwona and Beckmann, Irene K. and Hofacker, Ivo L. and Wolfinger, Michael T. and Sztuba-Solinska, Joanna pp. 496-506 ISSN 0305-1048 Taylor & Francis (2022)

  • Investigating Japanese encephalitis virus long-range terminal region interactions
    Park, Sean and Mrozowich, Tyler and Wolfinger, Michael T. and Patel, Trushar R. ISSN 0006-3495 (2022)

  • Investigating flaviviral genomic cyclization
    Mrozowich, Tyler and Park, Sean and Wolfinger, Michael T. and Patel, Trushar R. p. 311 ISSN 0006-3495 (2022)

  • Gene expression profiling of Pseudomonas aeruginosa upon exposure to colistin and tobramycin
    Cianciulli Sesso, Anastasia and Lilic, Branislav and Amman, Fabian and Wolfinger, Michael T. and Sonnleitner, Elisabeth and Bläsi, Udo p. 626715 ISSN 1664-302X FRONTIERS MEDIA SA (2021)

  • An African tick flavivirus forming an independent clade exhibits unique exoribonuclease-resistant RNA structures in the genomic 3'-untranslated region
    Harima, Hayato and Orba, Yasuko and Torii, Shiho and Qiu, Yongjin and Kajihara, Masahiro and Eto, Yoshiki and Matsuta, Naoya and Hang'ombe, Bernard M. and Eshita, Yuki and Uemura, Kentaro and Matsuno, Keita and Sasaki, Michihito and Yoshii, Kentaro and Nakao, Ryo and Hall, William W. and Takada, Ayato and Abe, Takashi and Wolfinger, Michael T. and Simmunza, Martin and Sawa, Hirofumi Sci. Rep., 11. p. 4883 ISSN 2045-2322 Nature (2021)

  • Dynamic Molecular Epidemiology Reveals Lineage-Associated Single-Nucleotide Variants That Alter RNA Structure in Chikungunya Virus
    Spicher, Thomas and Delitz, Markus and de Bernardi Schneider, Adriano and Wolfinger, Michael T. p. 239 ISSN 2073-4425 MDPI (2021)

  • Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2
    Popa, Alexandra and Genger, Jakob-Wendelin and Nicholson, Michael D. and Penz, Thomas and Schmid, Daniela and Aberle, Stephan W. and Agerer, Benedikt and Lercher, Alexander and Endler, Lukas and Colaço, Henrique and Smyth, Mark and Schuster, Michael and Grau, Miguel L. and Martínez-Jiménez, Francisco and Pich, Oriol and Borena, Wegene and Pawelka, Erich and Keszei, Zsofia and Senekowitsch, Martin and Laine, Jan and Aberle, Judith H. and Redlberger-Fritz, Monika and Karolyi, Mario and Zoufaly, Alexander and Maritschnik, Sabine and Borkovec, Martin and Hufnagl, Peter and Nairz, Manfred and Weiss, Günter and Wolfinger, Michael T. and von Laer, Dorothee and Superti-Furga, Giulio and Lopez-Bigas, Nuria and Puchhammer-Stöckl, Elisabeth and Allerberger, Franz and Michor, Franziska and Bock, Christoph and Bergthaler, Andreas Science Translational Medicine, 12 (573). eabe2555 ISSN 1646-6234 (2020)

  • Discoveries of Exoribonuclease-Resistant Structures of Insect-Specific Flaviviruses Isolated in Zambia
    Wastika, Christida E. and Harima, Hayato and Sasaki, Michihito and Hang’ombe, Bernard M. and Eshita, Yuki and Qiu, Yongjin and Hall, William W. and Wolfinger, Michael T. and Sawa, Hirofumi and Orba, Yasuko Viruses, 12 (9). p. 1017 ISSN 1999-4915 MDPI (2020)

  • Distinctive Regulation of Carbapenem Susceptibility in Pseudomonas aeruginosa by Hfq
    Sonnleitner, Elisabeth and Pusic, Petra and Wolfinger, Michael T. and Bläsi, Udo ISSN 1664-302X (2020)

  • Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture
    de Bernardi Schneider, Adriano and Ochsenreiter, Roman and Hostager, Reilly and Hofacker, Ivo L. and Janies, Daniel and Wolfinger, Michael T. p. 798 MDPI (2019)

  • Musashi binding elements in Zika and related Flavivirus 3′UTRs: A comparative study in silico
    de Bernardi Schneider, Adriano and Wolfinger, Michael T. p. 6911 ISSN 2045-2322 Nature (2019)

  • Functional RNA Structures in the 3'UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses
    Ochsenreiter, Roman and Hofacker, Ivo L. and Wolfinger, Michael T. Viruses, 11 (3). p. 298 ISSN 1999-4915 MDPI (2019)

  • Efficient computation of co-transcriptional RNA-ligand interaction dynamics
    Wolfinger, Michael T. and Flamm, Christoph and Hofacker, Ivo L. Methods, 143. pp. 70-76 Elsevier (2018)

  • In silico design of ligand triggered RNA switches
    Findeiß, Sven and Hammer, Stefan and Wolfinger, Michael T. and Kühnl, Felix and Flamm, Christoph and Hofacker, Ivo L. Methods, 143. pp. 90-101 Elsevier (2018)

  • NMR structural profiling of transcriptional intermediates reveals riboswitch regulation by metastable RNA conformations
    Helmling, Christina and Wacker, Anna and Wolfinger, Michael T. and Hofacker, Ivo L. and Hengesbach, Martin and Fürtig, Boris and Schwalbe, Harald pp. 2647-2656 ISSN 0002-7863 (2017)

  • Predicting RNA secondary structures from sequence and probing data
    Lorenz, Ronny and Wolfinger, Michael T. and Tanzer, Andrea and Hofacker, Ivo L. pp. 86-98 ISSN 1046-2023 (2016)

  • Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
    Hölzer, Martin and Krähling , Verena and Amman, Fabian and Barth, Emanuel and Bernhart, Stephan H. and Carmelo, Victor and Collatz, Maximilian and Doose, Gero and Eggenhofer, Florian and Ewald, Jan and Fallmann, Jörg and Feldhahn, Lasse and Fricke, Markus and Gebauer, Juliane and Gruber, Andreas R and Hufsky, Franziska and Indrischek, Henrike and Kanton, Sabina and Linde, Jörg and Mostajo, Nelly and Ochsenreiter, Roman and Riege, Konstantin and Rivarola-Duarte, Lorena and Sahyoun, Abdullah and Saunders, Sita and Seemann, Stefan E and Tanzer, Andrea and Vorgel, bertram and Wehner, Stefanie and Wolfinger, Michael T. and Backofen, Rolf and Gorodkin, Jan and Grosse, Ivo and Hoffmann, Steve and Hofacker, Ivo L. and Kaleta, Christoph and Stadler, Peter F. and Becker, Stephan and Marz, Manja ISSN 2045-2322 (2016)

  • Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity
    Tajaddod, Mansoureh and Tanzer, Andrea and Licht, Konstantin and Wolfinger, Michael T. and Badelt, Stefan and Huber, Florian and Pusch, Oliver and Schopoff, Sandy and Janisiw, Michael and Hofacker, Ivo L. and Jantsch, Michael F. p. 220 ISSN 1474-760X (2016)

  • SHAPE directed RNA folding
    Luntzer, Dominik and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. and Wolfinger, Michael T. Bioinformatics, 32. pp. 145-147 ISSN 1367-4803 (2015)

    • Paper in Conference Proceedings or in Workshop Proceedings

  • Bi-Alignments as Models of Incongruent Evolution of RNA Sequence and Structure
    Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. In: CIBB 2019: 16th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics , 4-6 September 2019 , Bergamo. Italy (2019)

    • Book

  • Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure
    Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. Lecture Notes in Computer Science, 12313 Springer, Cham, pp. 159-170 ISBN 978-3-030-63061-4 (2020)

    • Book Section/Chapter

  • Functional RNA Structures in the 3'UTR of Mosquito-Borne Flaviviruses
    Wolfinger, Michael T. and Ochsenreiter, Roman and Hofacker, Ivo L. In: Virus Bioinformatics. Chapman and Hall/CRC Press, Boca Raton, pp. 65-100 ISBN 9781003097679 (2021)

  • Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure
    Waldl, Maria and Will, Sebastian and Wolfinger, Michael T. and Hofacker, Ivo L. and Stadler, Peter F. In: Computational Intelligence Methods for Bioinformatics and Biostatistics. Lecture Notes in Computer Science, 12313 Springer, pp. 159-170 (2020)

    • This list was generated on Thu Apr 25 00:11:02 2024 CEST.
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