Items where Research Area is "Bioinformatics and Computational Biology" and Year is 2023

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Number of items: 20.

B

  • DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
    Badelt, Stefan and Lorenz, Ronny and Hofacker, Ivo L. Bioinformatics, 39 (1). btad034 ISSN 1367-4803 Oxford University Press (2023)

    • C

  • Identifying equally scoring trees in phylogenomics with incomplete data using Gentrius
    Chernomor, Olga and Elgert, Christiane and von Haeseler, Arndt ISSN 0362-4331 https://www.biorxiv.org/content/10.1101/108027v3 (2023)

    • D

  • Long non-coding RNAs contribute to DNA damage resistance in Arabidopsis thaliana
    Durut, Nathalie and Kornienko, Aleksandra E. and Lettner, Nicole and Schmidt, Heiko A. and Donà, Mattia and Nordborg, Magnus and Mittelsten Scheid, Ortrun ISSN 2692-8205 Cold Spring Harbor Laboratory (2023)

    • F

  • Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment
    Farman, Mariam R. and Petráčková, Denisa and Kumar, Dilip and Držmíšek, Jakub and Saha, Argha and Čurnová, Ivana and Čapek, Jan and Hejnarová, Václava and Amman, Fabian and Hofacker, Ivo L. and Vecerek, Branislav Emerging Microbes & Infections, 12 (1). e2146536 ISSN 2222-1751 (2023)

  • Genome-wide screening in pluripotent cells identifies Mtf1 as a suppressor of mutant huntingtin toxicity
    Ferlazzo, Giorgia Maria and Gambetta, Anna Maria and Amato, Sonia and Cannizzaro, Noemi and Angiolillo, Silvia and Arboit, Mattia and Diamante, Linda and Carbognin, Elena and Pflug, Florian G and Romani, Patrizia and La Torre, Federico and Galimberti, Elena and Capocci, Luca and Di Pardo, Alba and Vanzani, Paola and Zennaro, Lucio and Broccoli, Vania and Leeb, Martin and Moro, Enrico and Maglione, Vittorio and Martello, Graziano ISSN 2041-1723 Springer Nature (2023)

  • Genome-wide screening in pluripotent cells identifies Mtf1 as a suppressor of mutant huntingtin toxicity
    Ferlazzo, Giorgia Maria and Gambetta, Anna Maria and Amato, Sonia and Cannizzaro, Noemi and Pflug, Florian G ISSN 2041-1723 Springer Nature (2023)

    • G

  • Hypoxia hits APOL1 in the kidney
    Grampp, Steffen and Krüger, René and Lauer, Victoria and Uebel, Sebastian and Knaup, Karl X and Naas, Julia and Höffken, Verena and Weide, Thomas and Schiffer, Mario and Naas, Stephanie and Schödel, Johannes pp. 53-60 ISSN 0085-2538 Elsevier (2023)

    • K

  • Identification of two early blood biomarkers ACHE and CLEC12A for improved risk stratification of critically ill COVID-19 patients
    Kattner, Simone and Müller, Jan and Glanz, Karolina and Manoochehri, Mehdi and Sylvester, Caroline and Vainshtein, Yevhen and Berger, Marc Moritz and Brenner, Thorsten and Sohn, Kai ISSN 2045-2322 Nature Portfolio (2023)

  • Critical Growth of Cerebral Tissue in Organoids: Theory and Experiments
    Kiselev, Egor and Pflug, Florian G and von Haeseler, Arndt ISSN 550- 2368 American Physical Society (2023)

  • The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms
    Kleinova, Renata and Rajendra, Vinod and Leuchtenberger, Alina F. and Giudice, Claudio Lo and Vesely, Cornelia and Kapoor, Utkarsh and Tanzer, Andrea and Derdak, Sophia and Picardi, Ernesto and Jantsch, Michael F. pp. 4191-4207 ISSN 0305-1048 Oxford University Press (2023)

    • M

  • Investigating RNA- RNA interactions through computational and biophysical analysis.
    Mrozowich, Tyler and Park, Sean and Waldl, Maria and Henrickson, Amy and Tersteeg, Scott and Nelson, Corey and De Klerk, Anneke and Demeler, Borries and Hofacker, Ivo L. and Wolfinger, Michael T. and Patel, Trushar R. ISSN 0305-1048 (2023)

    • N

  • Hypoxia controls expression of kidney-pathogenic MUC1 variants
    Naas, Stephanie and Krüger, René and Knaup, Karl Xaver and Naas, Julia and Grampp, Steffen and Schiffer, Mario and Wiesener, Michael and Schödel, Johannes ISSN 2575-1077 global, open-access, editorially independent, and peer-reviewed journal founded by an alliance of EMBO Press, Rockefeller University Press, and Cold Spring Harbor Laboratory Press (2023)

    • O

  • Strukturierte RNAs in Viren
    Ochsenreiter, Roman and Wolfinger, Michael T. ISSN 1868-6249 (2023)

    • P

  • SVhound: detection of regions that harbor yet undetected structural variation
    Paulin Paz, Luis and Raveendran, Muthuswamy and Harris, R. Alan and Rogers, Jeffrey and von Haeseler, Arndt and Sedlazeck, Fritz ISSN 1471-2105 Springer Nature (2023)

    • S

  • Multi-chamber cardioids unravel human heart development and cardiac defects
    Schmidt, Clara and Deyett, Alison and Ilmer, Tobias and Hering, Steffen and Hofbauer, Pablo and Mendjan, Sasha and Haendeler, Simon and Torres Caballero, Aranxia and Novatchkova, Maria and Netzer, Michael A. and Ceci Ginistrelli, Lavrinia and Mancheno Juncosa, Estela and Bhattacharya, Tanishta and Mudjadzic, Amra and Pimpale, Lokesh and Jahnel, Stefan M. and Cirigliano, Martina and Reumann, Daniel and Tavernini, Katharina and Papai, Nora pp. 5587-5605 ISSN 0092-8674 Cell Press (2023)

    • T

  • Parallel Inference of Phylogenetic Stands with Gentrius
    Togkousidis, Anastasis and Chernomor, Olga and Stamatakis, Alexandros In: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) , 15-19 May 2023 , St. Petersburg, FL, USA (2023)

    • V

  • Modified RNAs and predictions with the ViennaRNA Package
    Varenyk, Yuliia and Spicher, Thomas and Hofacker, Ivo L. and Lorenz, Ronny Bioinformatics, 39 (11). ISSN 1367-4803 Oxford University Press (2023)

  • Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction
    von Löhneysen, Sarah and Spicher, Thomas and Varenyk, Yuliia and Yao, Hua-Ting and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. In: International Symposium on Bioinformatics Research and Applications , October 9–12 , Wrocław, Poland (2023)

    • W

  • Local RNA folding revisited
    Waldl, Maria and Spicher, Thomas and Lorenz, Ronny and Beckmann, Irene K. and Hofacker, Ivo L. and von Löhneysen, Sarah and Stadler, Peter F. p. 2350016 ISSN 1757-6334 World Scientific (2023)

    • Y

  • Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package
    Yao, Hua-Ting and Lorenz, Ronny and Hofacker, Ivo L. and Stadler, Peter F. Algorithms for Molecular Biology, 18 (1). p. 8 ISSN 1748-7188 Springer (2023)

    • This list was generated on Sun Apr 28 17:15:34 2024 CEST.
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